The challenges of MS and MS/MS analyses are often compounded by the use of several types of analytical instruments and high personnel turnover. To maintain – and even increase laboratory productivity, turn to Waters software to simplify interaction with your MS system and retain the ability to perform advanced experiments.

Waters MassLynx™ Software improves your MS system with its intuitive interface, intelligent instrument control, and software features built around the focus of your analysis: the sample. With much of its development driven by input from our extensive user base, MassLynx has evolved into a powerful software package that delivers the versatility and flexibility you require.

Transform Data Into Usable Results

To assist with both data acquisition and the transformation of data into usable results, MassLynx Software offers easy-to-use Application Managers that allow you to focus the power of MS on your laboratory's specific tasks.

  1. MassLynx MS Software
    A fundamental platform to acquire, analyze, manage, and share mass spectrometry information
  2. Quanpedia
    Quanpedia is an extensible and searchable database for quantitative LC/MS and LC/MS/MS method information. Quanpedia simplifies and accelerates quantitative UPLC/MS/MS analytical method creation.
  3. QCMonitor
    QCMonitor for MassLynx Software automates “on time” quantitative data quality monitoring to determine whether a QC or blank sample is within tolerances specified by the user.
  4. TrendPlot
    TrendPlot for MassLynx Software charts long-term system performance. Perform statistical analysis – identify outliers within a sample run, or spot trends in historical data across many sample runs.
  5. TargetLynx
    For high-throughput targeted quantification and confirmation analyses, complete with a full-range of automatic quality control checks
  6. OpenLynx Open Access
    Provides open access walk-up for LC/UV, LC/MS, LC/MS/MS, and GC/MS operation
  7. FractionLynx
    Automates sample purification, including the control of fraction collection as well as sample, fraction and data tracking.
  8. ChromaLynx
    Automate the processing of LC/MS, GC/MS, LC/MS/MS, or GC/MS/MS data allowing for the detection, identification, and semi-quantitative determination of components in complex mixtures.
  9. MassFragment
    MassFragment is a chemically intelligent structure elucidation tool for the structural assignment of product ions of your known chemical structures.
  10. MetaboLynx XS
    Rapidly detects the peaks in your LC/MS & LC/MS/MS sample analysis that result from in vitro or in vivo biotransformation.

  11. QuanOptimize
    The QuanOptimize Application Manager automates MRM (or SIR) method set-up for unattended "multi compound" quantitative LC/MS or LC/MS/MS analyses.
  12. MarkerLynx
    Processes complex multivariate data from LC/MS, LC/MS/MS, GC/MS, and GC/MS/MS metabonomic and metabolomic studies.
  13. ProfileLynx
    Automates data processing for chromatography-based tests used in physicochemical property analyses for lead optimization.
  14. POSI±IVE
    Review qualitative and quantitative TOF data in a single pass with POSI±IVE Software, and report just the quantitative results for positively detected components.

  15. BiopharmaLynx
    Determines the identity, purity, and stability of biopharmaceutical products from peptide maps or intact proteins.
  16. ProteinLynx Global SERVER (PLGS)
    A mass-informatics platform for quantitative and qualitative proteomics research and the central analytical platform for Waters proteomics systems.